Link to my github page

My github page (https://github.com/kyleaoconnell22) has a few repositories now with mostly Python scripts for manipulating data and running analyses related to target-capture projects.

The primary repositories are ‘Exome Capture Probe Design‘ which is the pipeline I used to design capture probes from three transcripts of parachuting frogs (genus Rhacophorus).

Next I have ‘Probe Design Plethodon‘, which I used to design capture probes from a Plethodon cinereus transcript and the Ambystoma reference genome.

I have ‘Target Capture Analyses‘, which include scripts for trimming and preparing the target capture outputs from analysis pipelines.

Finally, I have ‘O’Connell et al. MPE Cyrts‘, which includes scripts for running the BioGeoBears analyses I used in the MPE paper here. I am going to start adding scripts and input files for each of my papers, so stay tuned for future repositories.

Leave a Reply

Fill in your details below or click an icon to log in:

WordPress.com Logo

You are commenting using your WordPress.com account. Log Out /  Change )

Google photo

You are commenting using your Google account. Log Out /  Change )

Twitter picture

You are commenting using your Twitter account. Log Out /  Change )

Facebook photo

You are commenting using your Facebook account. Log Out /  Change )

Connecting to %s